There is a large atrium in the centre of the lair with three different floors, and multiple tunnels branching off of the walls. On the bottom floor, there is the garage and four bedrooms, each for the different turtles. On the middle floor is the arcade, kitchen, living room, and Splinter's bedroom. On the top floor is Donnie's lab, and the bathroom. (TBA) It was destroyed in "Shreddy or Not."
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- Unlike other incarnations of the Turtle Lair, in which its location is a carefully guarded secret, the Turtles in this series can be very casual about bringing visitors to their lair.