Shredder had convinced the Frogs that the Turtles were evil. However, when the Frogs were frozen by Captain Hoffman and his Anti-Turtle Force, the Turtles took them back to their lair and defrosted them, and Splinter implored that they show the Frogs compassion. The Frogs then double-cross Shredder and set him up by telling him the Turtles hid the final component of the Mutagen he needed in Stonewall Prison. Instead, the Turtles ambushed Shredder and his goons.
Along with the other frogs, Genghis chose to return to his swamp.
He and Napoleon Bonafrog later paid a visit to their Turtle friends in Dirk Savage: Mutant Hunter!, but were almost immediately captured and enslaved by Dirk Savage and A. J. Howard. They were later freed along with the other mutants.