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- Change is Constant, part 1
- Change is Constant, part 2
- Change is Constant, part 3
- Change is Constant, part 4
- Enemies Old, Enemies New: Prologue
- Raphael (Micro-Series issue)
- Enemies Old, Enemies New, part 1
- Enemies Old, Enemies New, part 2
- Enemies Old, Enemies New, part 3
- Leonardo (Micro-Series issue)
- Shadows of the Past, part 1
- Shadows of the Past, part 2
- Splinter (Micro-Series issue)
- Shadows of the Past, part 3
- Shadows of the Past, part 4
- Casey Jones (Micro-Series issue)
- Sins of the Fathers, part 1
- Sins of the Fathers, part 2
- Big Trouble in Little Italy (Annual 2012)
- Blood Brothers, part 1
- Blood Brothers, part 2
- Fugitoid (Micro-Series issue)
- Krang War, part 1
- Krang War, part 2
- Krang War, part 3
- Krang War, part 4
- The Secret History of the Foot Clan #1
- The Secret History of the Foot Clan #2
- The Secret History of the Foot Clan #3
- The Secret History of the Foot Clan #4
- City Fall, part 1
- City Fall, part 2
- City Fall, part 3
- City Fall, part 4
- Hun (Villain Micro-Series issue)
- City Fall, part 5
- City Fall, part 6
- City Fall, part 7
- Northampton, part 1
- Northampton, part 2
- Northampton, part 3
- Northampton, part 4
- Utrom Empire #3
- Annual 2014
- Monsters, Misfits, and Madmen, part 1
- Monsters, Misfits, and Madmen, part 2
- Monsters, Misfits, and Madmen, part 3
- Monsters, Misfits, and Madmen, part 4
- Turtles in Time #2 (flashback)
- New Mutant Order, part 2
- New Mutant Order, part 3
- New Mutant Order, part 4
- TMNT/Ghostbusters #1
- TMNT/Ghostbusters #2
- TMNT/Ghostbusters #3
- TMNT/Ghostbusters #4
- Attack on Technodrome, part 1
- Vengeance, part 1
- Vengeance, part 2
- Vengeance, part 3
- Casey & April #1
- Casey & April #2
- Casey & April #3
- Casey & April #4
- Order from Chaos, part 2
- Order from Chaos, part 3
- Order from Chaos, part 5
- Chasing Phantoms, part 1
- Chasing Phantoms, part 2
- Chasing Phantoms, part 3
- Chasing Phantoms, part 4
- TMNT Universe #5 (dream)
- Christmas Special
- TMNT Universe #20
- Invasion of the Triceratons, part 3
- Invasion of the Triceratons, part 5
- Kingdom of Rats, part 1
- Kingdom of Rats, part 3
- TMNT #85
- Battle Lines, part 1
- TMNT #89
- Raphael (Macro-Series issue)
- TMNT #90
- TMNT #91
- TMNT #92
- City at War, part 1
- FCBD 2019: Casualty of War
- City at War, part 2
- City at War, part 3
- City at War, part 4
- City at War, part 5
- City at War, part 6
- City at War, part 7
- City at War, part 8
- TMNT #101
- Jennika #1
- Jennika #3 (imagination)
- TMNT #112
- Time After Time, Part 4 (flashback)
- Jennika II #4 (dream)
- TMNT #119
- TMNT #123
- TMNT #124
- Annual 2021: Prelude to The Armageddon Game (flashback)
- TMNT #125
- TMNT #126
- TMNT #127
- TMNT #129
- TMNT #130
- The Armageddon Game #1
- TMNT #133 (onscreen)
- TMNT #134
- The Armageddon Game: The Alliance #2
- The Armageddon Game: The Alliance #5
- TMNT #138
- The Armageddon Game: The Alliance #6
- The Armageddon Game #8
- First, Last, Always, Part 6
- The Untold Destiny of the Foot Clan #1
- The Untold Destiny of the Foot Clan #2
- The Untold Destiny of the Foot Clan #3
- The Untold Destiny of the Foot Clan #4
- The Untold Destiny of the Foot Clan #5
- Mutant Nation #1
- Mutant Nation #2